PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn270991
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 222aa    MW: 24560.7 Da    PI: 7.8144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn270991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131463147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     rg+WT+ Ed +l  ++k +G g W+  +++      gRt++++k++w++ 
       Achn270991 14 RGAWTAMEDRILTAYIKAHGEGKWRNLPKRAAgrlPGRTDNEIKNYWNTI 63
                     89********************99999888888888***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20571IPR009057Homeodomain-like
SuperFamilySSF466894.41E-13868IPR009057Homeodomain-like
PROSITE profilePS5129417.68968IPR017930Myb domain
SMARTSM007175.3E-121366IPR001005SANT/Myb domain
PfamPF002491.3E-101463IPR001005SANT/Myb domain
CDDcd001677.50E-121664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAM EDRILTAYIK AHGEGKWRNL PKRAAGRLPG RTDNEIKNYW  60
NTILGKKIGS QTAREYSSKQ TPTTKSRGKQ PVIPPPPAIR TKAVRCTKVL APAAKTPPTH  120
GSLFLNQTVE KSLAQLEENQ SQGSTNHLLC VENSHGTEFS FYDQFHHNNG LCLDGLDDHD  180
MVFKDWTASE FLEVEGNCTL DVGSLASLLD CEEWHEPRIL G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9892818e-40JQ989281.1 Fragaria x ananassa transcription factor MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648383.13e-48PREDICTED: myb-related protein 308
TrEMBLA5BEK43e-49A5BEK4_VITVI; Putative uncharacterized protein
STRINGVIT_04s0008g01800.t018e-48(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-23myb domain protein 6